BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB007B11LP1|AL425649
(774 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1349 1268 0.0
>3x_Contig1349
Length = 5890
Score = 1268 bits (623), Expect = 0.0
Identities = 725/773 (93%), Gaps = 5/773 (0%)
Strand = Plus / Minus
Query: 1 tggtattcagwactggcttgctcatgttggaagtttattggttggtgttagtgttggatt 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4137 tggtattcagtgatggcttgctcatgttggaagtttattggttggtgttagtgttggatt 4078
Query: 61 ctgatatggcagactagtgttagagatggatttggaagatacaatcaaggacaagaaacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4077 ctgatatggcagactagtgttagagatggatttggaagatacaatcaaggacaagaaacc 4018
Query: 121 tttatcgtaccttatatatatatatwtdkdtwtagwtatwgataactgaycttgagtgaa 180
||||||||||||||||||||||||| | | ||| ||| ||||||||| ||||||||||
Sbjct: 4017 tttatcgtaccttatatatatatatatagatatagatatagataactgaccttgagtgaa 3958
Query: 181 taaactatgcaaagtgtggtattgtgtgtataaaatgacacatatcaaaaacaacaacta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3957 taaactatgcaaagtgtggtattgtgtgtataaaatgacacatatcaaaaacaacaacta 3898
Query: 241 gtcaatcgggctcaaaacgtttctttaacctttcacaacttagggtcaacgggtcttgga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3897 gtcaatcgggctcaaaacgtttctttaacctttcacaacttagggtcaacgggtcttgga 3838
Query: 301 ttgtacctatgtatkgratktcykttatgttgctaattagttkaagattgatwttggcak 360
|||||||||||||| | || | ||||||||||| ||| | |||| |||| ||||||
Sbjct: 3837 ttgtacctatgtatggaatgcccgatatgttgctaa-tag-tgaaga-tgatattggcag 3781
Query: 361 atccattttttgtgtgtgytaggcgatattgwatgtgaaaagawaaggaagggctatgtg 420
| ||||| |||| ||| |||||||||||| ||||||||||| |||||||||||| |||
Sbjct: 3780 aaccattccatgtgagtgctaggcgatattgaatgtgaaaagaaaaggaagggctaagtg 3721
Query: 421 aggatgttctttagawgggtaaagaggcagcccttgtcacgtgaccgca-gagccacact 479
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 3720 aggatgttctttagaagggtaaagaggcagcccttgtcacgtgaccgcaggagccacact 3661
Query: 480 gaatattaccacaacgtcggcgttatagcaccgaccttaggatggwcaacgggaaawawa 539
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |
Sbjct: 3660 gaatattaccacaacgtcggcgttatagcaccgaccttaggatggacaacgggaaaaaaa 3601
Query: 540 acwaaawattctataatkkcacgtkactagactagtcacgtgtwtgtccacaattatwtt 599
|| ||| || | ||||| ||||| |||||||||||||||||| ||||||||||||| ||
Sbjct: 3600 acaaaaaatgccataatggcacgtgactagactagtcacgtgtatgtccacaattatatt 3541
Query: 600 gccgctactgtccgccattgctctccactccccccccgctttctattcctccgttcgaaa 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3540 gccgctactgtccgccattgctctccactccccccccgctttctattcctccgttcgaaa 3481
Query: 660 cccgatgggaccattaattcttccgttgcaggggtcccgaaaagaaattccgcgattcca 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3480 cccgatgggaccattaattcttccgttgcaggggtcccgaaaagaaattccgcgattcca 3421
Query: 720 ctcattagatcgtatgttgttccggacagtttagaggtaa-ctttttgctgaa 771
|||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 3420 ctcattagatcgtatgttgttccggacagtttagaggtaacctttttgctgaa 3368
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.41 0.716 1.34
Gapped
Lambda K H
1.41 0.716 1.34
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6468
Number of Sequences: 1807
Number of extensions: 6468
Number of successful extensions: 186
Number of sequences better than 1.0e-20: 1
length of query: 774
length of database: 10,358,551
effective HSP length: 16
effective length of query: 758
effective length of database: 10,329,639
effective search space: 7829866362
effective search space used: 7829866362
T: 0
A: 40
X1: 5 (10.2 bits)
X2: 14 (28.5 bits)
S1: 12 (24.9 bits)
S2: 49 (100.2 bits)